SSSOM Curator

Workflows

Predict new mappings, e.g., between Medical Subject Headings (MeSH) and the Medical Actions Ontology (MaxO) with:

$ uv run main.py predict lexical mesh maxo

Run the curator with:

$ uv run main.py web

Export

Output summary charts and tables with:

$ mkdir output/
$ uv run main.py summarize --output-directory output/

Merge the positive, negative, and predicted mappings together and output several SSSOM flavors (TSV, OWL, JSON) in a given directory with:

$ mkdir sssom/
$ uv run main.py merge --sssom-directory sssom/

Maintenance

Format/lint the mappings with:

$ uv run main.py lint

Test the integrity of mappings with:

$ uv run main.py test

License

Semantic mappings curated in this directory are licensed under the Creative Commons Zero v1.0 Universal (CC0-1.0) License.

Colophon

This repository was generated using SSSOM-Curator.