DataPLANT
A collection of ontologies, controlled vocabularies, and schemas relevant for the DataPLANT Consortium seeded from corresponding the TIB OLS collection. See also a recent review on ontologies for plant research data.
Maintainers
Suggest a new addition to this collection here.
Ontologies
The following table comes from Semantic Farm collection
0000023, which is automatically
synced from the TIB Terminology Service collection
dataplant.
| Prefix | Name | License |
|---|---|---|
AGRO | Agronomy Ontology | CC-BY-4.0 |
bao | BioAssay Ontology | CC-BY-SA-4.0 |
BCO | Biological Collections Ontology | CC0-1.0 |
BFO | Basic Formal Ontology | CC-BY-4.0 |
bioportal.bof | Biodiversity Ontology | |
bioportal.geospecies | GeoSpecies Ontology | |
BTO | BRENDA Tissue Ontology | CC-BY-4.0 |
CHEBI | Chemical Entities of Biological Interest | CC-BY-4.0 |
CHMO | Chemical Methods Ontology | CC-BY-4.0 |
COB | Core Ontology for Biology and Biomedicine | CC0-1.0 |
dpbo | DataPLANT Biology Ontology | CC-BY-4.0 |
edam | EDAM Ontology | CC-BY-SA-4.0 |
EFO | Experimental Factor Ontology | Apache-2.0 |
ENVO | Environment Ontology | CC0-1.0 |
EO | Plant Environment Ontology | CC-BY-4.0 |
FLOPO | Flora Phenotype Ontology | CC0-1.0 |
GAZ | Gazetteer | CC0-1.0 |
GO | Gene Ontology | CC-BY-4.0 |
MMO | Measurement method ontology | CC0-1.0 |
MOD | Protein modification | CC-BY-4.0 |
MS | Mass spectrometry ontology | CC-BY-3.0 |
msio | Metabolomics Standards Initiative Ontology | CC-BY-3.0 |
NCBITaxon | NCBI Taxonomy | CC0-1.0 |
NCIT | NCI Thesaurus | CC-BY-4.0 |
OBI | Ontology for Biomedical Investigations | CC-BY-4.0 |
OMP | Ontology of Microbial Phenotypes | CC-BY-3.0 |
PATO | Phenotype And Trait Ontology | CC-BY-3.0 |
PCO | Population and Community Ontology | CC0-1.0 |
PECO | Plant Experimental Conditions Ontology | CC-BY-4.0 |
PO | Plant Ontology | CC-BY-4.0 |
ppeo | Plant Phenotype Experiment Ontology | CC-BY-4.0 |
PPO | Plant Phenology Ontology | CC-BY-3.0 |
PSO | Plant Stress Ontology | CC-BY-4.0 |
RO | Relation Ontology | CC0-1.0 |
STATO | The Statistical Methods Ontology | CC-BY-3.0 |
SWO | Software Ontology | CC-BY-4.0 |
TO | Plant Trait Ontology | CC-BY-4.0 |
UBERON | Uber Anatomy Ontology | CC-BY-3.0 |
UO | Units of measurement ontology | CC-BY-3.0 |
Colophon
This page was automatically generated on 2026-06-10 using Semantic Farm (v0.13.59) by running the following commands:
$ git clone https://github.com/nfdi-de/nfdi-sections
$ cd nfdi-sections
$ uv run scripts/update_collections.py
$ git commit -am "Update WG Onto collections"
$ git push