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NFDI4Health

Source: /files/meta/Used_Ontologies_at_NFDI.xlsx (sheet: NFDI4Health)

Ontology IDOntology NameDomainLicenseModularityFormatdeveloped / reused / only indexed / only evaluatedUsed inComments / descriptionNFDI4Health contributionsFile URLDocs URLSemLookP / OLS URLFHIR URL (normative, BfArM, MII, NUM, HiGHmed, ...)BioportalGithub
NFDI4Health MDSMedizinische ForschungCC BY 4.0reuses: NFDI4Health CS MDS Provenance Data Source, NFDI4Health CS MDS Study Status, NFDI4Health CS MDS Remaining Concepts, DCTERMS, DataCite, Maelstrom, UMLS Metathesaurus, SNOMED CT, LOINC, UCUM, NCI Metathesaurus, ISO Country and Regional Codes, ISO 3166 Part 2 Country Subdivision Codes, IETF language tags, ICD-10, ICD-11, MeSH, HL7 Title Type, HL7 SPDX License, HL7 Administrative Gender, HL7 V3 Participation Type, HL7 V3 Act Relationship TypexlsxdevelopedCentral Search Hub, Local Data HubZentrales Metadatenschema von NFDI4Healthyeshttps://repository.publisso.de/resource/frl%3A6450625
NFDI4Health CS MDS Provenance Data SourceMedizinische ForschungCC BY 4.0fhirdevelopedCentral Search Hub, Local Data Hub, NFDI4Health MDSCode system defining data sources in a Provenance resource.yeshttps://simplifier.net/nfdi4health-metadata-schema/nfdi4health-cs-mds-provenance-data-source
NFDI4Health CS MDS Study StatusMedizinische ForschungCC BY 4.0fhirdevelopedCentral Search Hub, Local Data Hub, NFDI4Health MDSCode system defining concepts about different status of a study.yeshttps://simplifier.net/nfdi4health-metadata-schema/nfdi4health-cs-mds-study-status
NFDI4Health CS MDS Remaining ConceptsMedizinische ForschungCC BY 4.0fhirdevelopedCentral Search Hub, Local Data Hub, NFDI4Health MDSCode system defining remaining concepts without mapping to concepts from international terminologies, ontologies, classifications, etc.yeshttps://simplifier.net/nfdi4health-metadata-schema/nfdi4health-cs-mds-remaining-concepts
DCTERMSFachübergreifendCC BY 4.0rdfreusedNFDI4Health MDSBasic metadata termsnohttps://www.dublincore.org/specifications/dublin-core/dcmi-terms/
DataCiteFachübergreifendxsdreusedNFDI4Health MDSAdvanced metadata termsnohttps://schema.datacite.org/meta/kernel-4.4/https://doi.org/10.14454/3w3z-sa82
MaelstromKohortenProprietaryhtmlreusedNFDI4Health MDSClassifying variables used in cohortsnohttps://www.maelstrom-research.org/harmonization-search#lists?type=studies&query=study(in(Mica_study.className,HarmonizationStudy),limit(0,20))
UMLS MetathesaurusUMLS MetathesaurusMedizin allgemeinProprietaryrrfreusedNFDI4Health MDSUsing UMLS with FHIRnohttps://www.nlm.nih.gov/research/umls/index.html2.16.840.1.113883.6.86
SNOMED CTSNOMED CTMedizin allgemeinProprietaryrf2reusedNFDI4Health MDSUsing SNOMED CT with FHIRnohttp://snomed.info/sct2.16.840.1.113883.6.96
LOINCLOINCLaborwerteProprietaryaccdbreusedNFDI4Health MDSUsing LOINC with FHIRnohttp://loinc.org2.16.840.1.113883.6.1
UCUMUCUMMaßeinheitenProprietaryhtmlreusedNFDI4Health MDSUsing UCUM with FHIRnohttp://unitsofmeasure.org2.16.840.1.113883.6.8
NCI MetathesaurusNCI MetathesaurusFachübergreifendProprietaryrrfreusedNFDI4Health MDSUsing NCI Metathesaurus with FHIRnohttp://ncimeta.nci.nih.gov2.16.840.1.113883.3.26.1.2
ISO Country and Regional CodesISO Country and Regional CodesAdministrativProprietaryISOCOUNTRIESpdfreusedNFDI4Health MDSUsing ISO 3166 Codes with FHIRnourn:iso:std:iso:31661.0.3166.1.2.2
ISO 3166 Part 2 Country Subdivision CodesISO 3166 Part 2 Country Subdivision CodesAdministrativProprietarypdfreusedNFDI4Health MDSTwo-letter code element from ISO 3166-1 followed by a separator and up to three alphanumeric charactersnourn:iso:std:iso:3166:-21.0.3166.2
IETF language tagsIETF language tagsFachübergreifendProprietarytxtreusedNFDI4Health MDSThis is used for identifying language throughout FHIR. Note that usually these codes are in a code and the system is assumednourn:ietf:bcp:472.16.840.1.113883.6.121
ICD-10ICD-10KrankheitenProprietaryclamlreusedNFDI4Health MDSWHO and german variantnohttps://www.bfarm.de/DE/Kodiersysteme/Klassifikationen/ICD/ICD-10-GM/_node.htmlICD-10
ICD-11ICD-11KrankheitenProprietaryclamlreusedNFDI4Health MDSUsing ICD-x with FHIRnohttps://www.bfarm.de/DE/Kodiersysteme/Klassifikationen/ICD/ICD-11/uebersetzung/_node.html2.16.840.1.113883.6.347
MeSHMeSHFachübergreifendProprietaryrdfreusedNFDI4Health MDSUsing MeSH in FHIRnohttps://www.ncbi.nlm.nih.gov/mesh2.16.840.1.113883.6.177
HL7 Title TypeHL7 Title TypeFachübergreifendProprietaryfhirreusedNFDI4Health MDSUsed to express the reason and specific aspect for the variant title, such as language and specific language.nohttp://hl7.org/fhir/title-type2.16.840.1.113883.6.121
HL7 SPDX LicenseHL7 SPDX LicenseLizenzenProprietaryfhirreusedNFDI4Health MDSThe license that applies to an Implementation Guide (using an SPDX license Identifiers, or 'not-open-source'). The binding is required but new SPDX license Identifiers are allowed to be used (https://spdx.org/licenses/).nohttp://hl7.org/fhir/spdx-license2.16.840.1.113883.4.642.4.1027
HL7 Administrative GenderHL7 Administrative GenderGeschlechtProprietaryfhirreusedNFDI4Health MDSThe gender of a person used for administrative purposes."nohttp://hl7.org/fhir/administrative-gender2.16.840.1.113883.4.642.4.2
HL7 V3 Participation TypeHL7 V3 Participation TypeFachübergreifendProprietaryfhirreusedNFDI4Health MDSA code specifying the meaning and purpose of every Participation instance. Each of its values implies specific constraints on the Roles undertaking the participation.nohttp://terminology.hl7.org/CodeSystem/v3-ParticipationType2.16.840.1.113883.5.90
HL7 V3 Act Relationship TypeHL7 V3 Act Relationship TypeFachübergreifendProprietaryfhirreusedNFDI4Health MDSUsed in combination with NFDI4Health' defined values to express the relationship between two resources in the Value Sets NFDI4Health_VS_MDS_Relation_Type_Ids_Local_HL7V3 and NFDI4Health_VS_MDS_Relation_Type_Ids_Nfdi_Local_HL7V3nohttp://terminology.hl7.org/CodeSystem/v3-ActRelationshipType2.16.840.1.113883.5.1002
UNDER REVIEW
AFEOowl
AGROVOCskos
AHOLowl
Alpha-IDFreitextdiagnosen
ATCArzneimittelwirkstoffeowl
ATOLowl
BAOowl
CHEBIowl
CLowl
CLOowl
CMPOCHEBI, GO, PATOowl
COVID_VAR
DBSNP
DOIDKrankheitenCHEBI, FOODON, NCBIT, AXON, RO, HP, UBERON, OIO, SO, DC, GENO, IAO, NCIT, DCTERMS, DISDRIV, OWL, TRANS, SYMP, IDO, OBI, RDFS, ECO, CL, EXOowl
DRGAbrechnung mit Krankenkassen
EBQM
EFOORDO, MONDO, CHEBI, GO, NCBITAXON, DC, NCIT, HP, FMA, OIO, OWL, UBERON, RO, PR, FBBT, OBI, OBA, IAO, SKOS, SO, BAO, DCTERMS, CLO, HANCESTRO, OGMS, PO, IDO, ZFA, RDFS, TO, CL, PATO, MPATH, DOID, FBDV, BFO, BTO, MA, MP, OMIT, UO, WBLSowl
EOL
EXTRUONT
FOODEX2MDS Modul Ernährung
FOODONNCBITAXON, CARO, CHEBI, GO, FLOPO, NCIT, ENVO, CDNO, OIO, UBERON, DC, OBI, AGRO, IAO, COB, PECO, PR, DCTERMS, HANCESTRO, PCO, PO, RO, MSIO, ONS, ECOCORE, RDFS, DRON, PATO, BFO, SEPIO, UO, BTO, APOLLO_SV, OWL, FAO, CL, SCHEMAORG_HTTP, STATOowl
GOOIO, DC, IAO, DCTERMS, RDFS, RO, OWLowl
HGNCowl
Hl7 Vocabulary
HPOAbnormalitätenBFO aligned, OBO basedowl
ICD-10 GMDiagnosen
ICD10DiagnosenMDS (Metadatenschema)
ICDOKrebserkrankungenBFO aligned, OBO based
IDMPArzneimittel
MAELSTROMQuestionnaire
MedDRAUnerwünschte Ereignisse
MESHVerschlagwortung von Publikationenrdf
MESHDrdf
MGI
MIRBASE
NCBIGENErdf
NCBITAXONOIO, DCTERMS, IAOowl
NCITOBO_basedowlMDS
ONECHEBI, GO, DC, NCBITAXON, OWL, OMRSE, UBERON, OBI, VO, RDFS, IAO, SO, PR, DCTERMS, CLO, OGMS, HP, IDO, SKOS, PATO, ONS, OIO, BFO, RO, APOLLO_SV, ENVO, UO, CHMO, CLowlMDS Ernährung
OPSProzeduren (chirurgische Eingriffe)
OrphaNetSeltene Erkrankungen
RGD
Rote ListeArzneimittel
SC2V
SDTMErgebnisdatensätze
SNOMEDMDS, Questionnaire
TNMKrebserkrankungen
UBERONCARO, CHEBI, RO, GO, NCBITAXON, DC, PR, OIO, SEMAPV, DCTERMS, IAO, SKOS, SO, NBO, OMO, CL, RDFS, PATO, ENVO, BFO, BSPO, OWLowl
UMLSMetaterminologieMDS
UNIPROT
XDS Value Sets