NFDI4Health
A placeholder collection of ontologies, controlled vocabularies, and schemas relevant for the NFDI4Health Consortium created by the NFDI Section Metadata WG Ontology Harmonization and Mapping. The working group is in the process of identifying NFDI4Health Consortium members appropriate for maintaining this collection.
Maintainers
Suggest a new addition to this collection here.
Ontologies
The following table comes from Semantic Farm collection
0000041.
| Prefix | Name | License |
|---|---|---|
agrovoc | AGROVOC | CC-BY-4.0 |
ahol | Animal Health Ontology for Livestock | CC-BY-4.0 |
atc | Anatomical Therapeutic Chemical Classification System | |
atol | Animal Trait Ontology for Livestock | CC-BY-4.0 |
bao | BioAssay Ontology | CC-BY-SA-4.0 |
CHEBI | Chemical Entities of Biological Interest | CC-BY-4.0 |
CLO | Cell Line Ontology | CC-BY-3.0 |
cmpo | Cellular Microscopy Phenotype Ontology | |
DataCite | DataCite Ontology | CC-BY-4.0 |
dbsnp | dbSNP | |
dcterms | Dublin Core Metadata Initiative Terms | CC-BY-4.0 |
DOID | Human Disease Ontology | CC0-1.0 |
EFO | Experimental Factor Ontology | Apache-2.0 |
foodex2 | Food Classification and Description System (from FSA Food Type identifiers) | |
FOODON | The Food Ontology | CC-BY-4.0 |
GO | Gene Ontology | CC-BY-4.0 |
hgnc | HUGO Gene Nomenclature Committee | CC0-1.0 |
HP | Human Phenotype Ontology | hpo |
IAO | Information Artifact Ontology | CC-BY-4.0 |
icd10 | International Classification of Diseases, 10th Revision | Custom |
icd11 | International Classification of Diseases, 11th Revision (Foundation Component) | CC-BY-ND-3.0-IGO |
icdo | International Classification of Diseases for Oncology | CC-BY-ND-3.0-IGO |
loinc | Logical Observation Identifiers Names and Codes | Custom |
meddra | Medical Dictionary for Regulatory Activities Terminology | |
mesh | Medical Subject Headings | CC0-1.0 |
MGI | Mouse Genome Informatics | CC-BY-4.0 |
mirbase | miRBase pre-miRNA | public-domain |
NCBIGene | NCBI Gene | |
NCBITaxon | NCBI Taxonomy | CC0-1.0 |
NCIT | NCI Thesaurus | CC-BY-4.0 |
ORPHA | Orphanet | CC-BY-4.0 |
rgd | Rat Genome Database | CC-BY-4.0 |
snomedct | SNOMED CT (International Edition) | Custom |
spdx | Software Package Data Exchange License | CC0-1.0 |
UBERON | Uber Anatomy Ontology | CC-BY-3.0 |
ucum | Unified Code for Units of Measure | |
umls | Unified Medical Language System Concept Unique Identifier | Custom |
uniprot | UniProt Protein | CC-BY-4.0 |
Colophon
This page was automatically generated on 2026-06-10 using Semantic Farm (v0.13.59) by running the following commands:
$ git clone https://github.com/nfdi-de/nfdi-sections
$ cd nfdi-sections
$ uv run scripts/update_collections.py
$ git commit -am "Update WG Onto collections"
$ git push